- Class: 3
- Architecture: 3.40:3-Layer(aba) Sandwich
- Topology: 3.40.50:Rossmann fold
- Homology: 3.40.50.450:
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1f8x | [A6] | [A6] | [A6] | 2.5 | ||||
1f8y | [A6] | [A6] | [A6] | 2.4 | 5MD:5-METHYL-2___sq___-DEOXYPSEUDOURIDINE | |||
1kzh | [A2] | [A2] | [A2] | 2.55 | SO4:SULFATE ION | |||
1mto | [A4] | [A4] | [A4] | 3.2 | F6P:6-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE | |||
1pfk | [A4] | [A4] | [A4] | 2.4 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE FBP:1,6-DI-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE MG:MAGNESIUM ION | |||
1rcu | [A4] | [A4] | [A4] | 2.5 | MSE:SELENOMETHIONINE | |||
1s2d | [A6] | [A6] | [A6] | 2.1 | ADE:ADENINE V3M:2-DEOXY-2-FLUORO-ALPHA-D-ARABINOFURANOSE | |||
1s2g | [A6] | [A6] | [A6] | 2.1 | 3D1:(2R,3S,5R)-5-(6-AMINO-9H-PURIN-9-YL)-TETRAHYDRO-2-(HYDROXYMETHYL)FURAN-3-OL | |||
1s2i | [A6] | [A6] | [A6] | 2.24 | BP1:6-BROMO-7H-PURINE | |||
1s2l | [A6] | [A6] | [A6] | 2.1 | ||||
1s3f | [A6] | [A6] | [A6] | 2.2 | SNI:9-(3,4-DIHYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-2-YL)-1,9-DIHYDRO-PURINE-6-THIONE | |||
1t35 | [A8] | [A8] | [A8] | 2.72 | MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
1weh | [A] | [A] | [A] | 1.8 | MSE:SELENOMETHIONINE | |||
1wek | [A6] | [A6] | [A6] | 2.2 | MSE:SELENOMETHIONINE PO4:PHOSPHATE ION | |||
1ydh | [A2] | [A2] | [A2] | 2.15 | EDO:1,2-ETHANEDIOL MSE:SELENOMETHIONINE NO3:NITRATE ION | |||
1zxx | [A4] | [A4] | [A4] | 1.85 | SO4:SULFATE ION | |||
2a0k | [A2] | [A2] | [A2] | 1.8 | GOL:GLYCEROL MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
2a33 | [A2] | [A2] | [A2] | 1.95 | MG:MAGNESIUM ION MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
2f2t | [A2] | [A2] | [A2] | 1.7 | 5IQ:ISOQUINOLIN-5-AMINE GOL:GLYCEROL MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
2f48 | [A2] | [A2] | [A2] | 2.11 | AF3:ALUMINUM FLUORIDE FBP:1,6-DI-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE | |||
2f62 | [A2] | [A2] | [A2] | 1.5 | 12M:(2-ETHYLPHENYL)METHANOL GOL:GLYCEROL MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
2f64 | [A2] | [A2] | [A2] | 1.6 | 12Q:1-METHYLQUINOLIN-2(1H)-ONE GOL:GLYCEROL MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
2f67 | [A2] | [A2] | [A2] | 1.6 | 12B:BENZO[CD]INDOL-2(1H)-ONE GOL:GLYCEROL MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
2hig | [A4] | [A4] | [A4] | 2.4 | NA:SODIUM ION | |||
2iz5 | [A4] | [A4] | [A4] | 2.29 | ||||
2iz6 | [A4] | [A4] | [A4] | 1.6 | ||||
2iz7 | [A4] | [A4] | [A4] | 2.32 | ||||
2khz | [A2] | [A2] | [A2] | NOTAPPLICABLE. | ||||
2klh | [A2] | [A2] | [A2] | NOTAPPLICABLE. | 5GP:GUANOSINE-5___sq___-MONOPHOSPHATE | |||
2nx2 | [A] | [A] | [A] | 2 | ||||
2pfk | [A2] | [A2] | [A2] | 2.4 | ||||
2pmb | [A4] | [A4] | [A4] | 1.99 | GOL:GLYCEROL MSE:SELENOMETHIONINE PO4:PHOSPHATE ION | |||
2q4d | [A2] | [A2] | [A2] | 2.15 | EDO:1,2-ETHANEDIOL MSE:SELENOMETHIONINE NO3:NITRATE ION | |||
2q4o | [A2] | [A2] | [A2] | 1.95 | MG:MAGNESIUM ION MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
3bq9 | [A4] | [A4] | [A4] | 1.8 | GOL:GLYCEROL SO4:SULFATE ION | |||
3f5m | [A4] | [A4] | [A4] | 2.7 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE GOL:GLYCEROL MG:MAGNESIUM ION NA:SODIUM ION SO4:SULFATE ION | |||
3gh1 | [A4] | [A4] | [A4] | 1.9 | MSE:SELENOMETHIONINE PO4:PHOSPHATE ION | |||
3hno | [A2] | [A2] | [A2] | 2 | BR:BROMIDE ION | |||
3imk | [A] | [A] | [A] | 1.45 | GOL:GLYCEROL MES:2-(N-MORPHOLINO)-ETHANESULFONIC ACID MSE:SELENOMETHIONINE PG4:TETRAETHYLENE GLYCOL PG6:1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE | |||
3k2q | [A2] | [A2] | [A2] | 2.5 | NA:SODIUM ION | |||
3maj | [A2] | [A2] | [A2] | 2.05 | MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
3o8l | [A] | [A] | [A] | 3.2 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE ATP:ADENOSINE-5___sq___-TRIPHOSPHATE PO4:PHOSPHATE ION | |||
3o8n | [A] | [A] | [A] | 3.2 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE PO4:PHOSPHATE ION | |||
3o8o | [A2B2] | [A2B2] | [A4] | 2.9 | F6P:6-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE FDP:2,6-DI-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE | |||
3opy | [A4B4C4] | [A4B4C4] | [A4B4C4] | 3.05 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE SO4:SULFATE ION | |||
3pfk | [A4] | [A4] | [A4] | 2.4 | PO4:PHOSPHATE ION | |||
3qua | [A2] | [A2] | [A2] | 2.1 | UNL:UNKNOWN LIGAND | |||
3sbx | [A2] | [A2] | [A2] | 2.5 | AMP:ADENOSINE MONOPHOSPHATE | |||
3u39 | [A4] | [A4] | [A4] | 2.79 | CA:CALCIUM ION | |||
3uqz | [A2] | [A2] | [A2] | 2.7 | MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
4a3s | [A4] | [A4] | [A4] | 2.3 | ||||
4fyh | [A2] | [A2] | [A2] | 2.44 | SO4:SULFATE ION TR5:5-METHYL-1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-1,5-DIHYDRO-1,4,5,6,8-PENTAAZAACENAPHTHYLEN-3-AMINE | |||
4fyi | [A2] | [A2] | [A2] | 1.96 | 6C6:N-CYCLOPENTYLADENOSINE 5___sq___-(DIHYDROGEN PHOSPHATE) | |||
4fyk | [A2] | [A2] | [A2] | 1.79 | SO4:SULFATE ION SRA:ADENOSINE -5___sq___-THIO-MONOPHOSPHATE | |||
4hx9 | [A6] | [A6] | [A6] | 2.68 | PG4:TETRAETHYLENE GLYCOL SO4:SULFATE ION | |||
4i36 | [A4] | [A4] | [A4] | 2.3 | ||||
4i4i | [A4] | [A4] | [A4] | 2.49 | PEP:PHOSPHOENOLPYRUVATE | |||
4i7e | [A4] | [A4] | [A4] | 2 | PEP:PHOSPHOENOLPYRUVATE | |||
4jel | [A2] | [A2] | [A2] | 1.95 | MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
4jem | [A2] | [A2] | [A2] | 1.55 | C5P:CYTIDINE-5___sq___-MONOPHOSPHATE | |||
4jen | [A2] | [A2] | [A2] | 3 | PO4:PHOSPHATE ION | |||
4kxl | [A2] | [A2] | [A2] | 1.69 | 6C6:N-CYCLOPENTYLADENOSINE 5___sq___-(DIHYDROGEN PHOSPHATE) SO4:SULFATE ION | |||
4kxm | [A2] | [A2] | [A2] | 2.24 | 6IA:N6-ISOPENTENYL-ADENOSINE-5___sq___-MONOPHOSPHATE | |||
4kxn | [A2] | [A2] | [A2] | 1.9 | 6K6:N-(FURAN-2-YLMETHYL)ADENOSINE 5___sq___-(DIHYDROGEN PHOSPHATE) | |||
4ljk | [A2] | [A2] | [A2] | 2.35 | MSE:SELENOMETHIONINE | |||
4ljl | [A2] | [A2] | [A2] | 2.2 | ||||
4ljr | [A2](A2) | [A2](A2) | [A2](A2) | 1.8 | ||||
4mcj | [A2] | [A2] | [A2] | 2.4 | CL:CHLORIDE ION MSE:SELENOMETHIONINE | |||
4mej | [A3] | [A3] | [A3] | 2.1 | 28Y:3H-IMIDAZO[2,1-B]PURIN-4(5H)-ONE SO4:SULFATE ION | |||
4npa | [A4] | [A4] | [A4] | 2.1 | PEG:DI(HYDROXYETHYL)ETHER PO4:PHOSPHATE ION SO4:SULFATE ION | |||
4ohb | [A] | [A] | [A] | 2.4 | 5HM:5-(HYDROXYMETHYL)CYTIDINE 5___sq___-(DIHYDROGEN PHOSPHATE) | |||
4ohr | [A] | [A] | [A] | 1.8 | ||||
4p5d | [A2] | [A2] | [A2] | 2.11 | N6P:6-(NAPHTHALEN-2-YL)-9-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-9H-PURINE SO4:SULFATE ION | |||
4p5e | [A2] | [A2] | [A2] | 1.35 | CA:CALCIUM ION N6P:6-(NAPHTHALEN-2-YL)-9-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-9H-PURINE | |||
4pfk | [A4] | [A4] | [A4] | 2.4 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE F6P:6-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE MG:MAGNESIUM ION | |||
4rh3 | [A4] | [A4] | [A4] | 3.02 | ACP:PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER PO4:PHOSPHATE ION | |||
4u1r | [A4] | [A4] | [A4] | 2.8 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE PO4:PHOSPHATE ION | |||
4wl0 | [A4] | [A4] | [A4] | 2.89 | PO4:PHOSPHATE ION | |||
4xyk | [A4] | [A4] | [A4] | 3.4 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE PO4:PHOSPHATE ION | |||
5ajt | [A2] | [A2] | [A2] | 2.43 | EDO:1,2-ETHANEDIOL TAR:D(-)-TARTARIC ACID | |||
5aju | [A2] | [A2] | [A2] | 2.5 | RP5:5-O-PHOSPHONO-BETA-D-RIBOFURANOSE SO4:SULFATE ION | |||
5its | [A2] | [A2] | [A2] | 2.3 | GOL:GLYCEROL PO4:PHOSPHATE ION | |||
5mll | [A] | [A] | [A] | 1.9 | EDO:1,2-ETHANEDIOL | |||
5vto | [A2] | [A2] | [A2] | NOTAPPLICABLE. | ||||
5wq3 | [A6] | [A6] | [A6] | 1.95 | 1PE:PENTAETHYLENE GLYCOL CL:CHLORIDE ION EDO:1,2-ETHANEDIOL GOL:GLYCEROL PGE:TRIETHYLENE GLYCOL PO4:PHOSPHATE ION | |||
5xoe | [A2] | [A2] | [A2] | 2.98 | ||||
5xz6 | [A2] | [A2] | [A2] | 2.7 | ANP:PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER GOL:GLYCEROL | |||
5xz7 | [A2] | [A2] | [A2] | 1.6 | F6P:6-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER | |||
5xz8 | [A2] | [A2] | [A2] | 1.95 | ANP:PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER F6P:6-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE GOL:GLYCEROL MG:MAGNESIUM ION | |||
5xz9 | [A2] | [A2] | [A2] | 2 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE GOL:GLYCEROL | |||
5xza | [A2] | [A2] | [A2] | 1.9 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE FLC:CITRATE ANION GOL:GLYCEROL | |||
5zbj | [A2] | [A2] | [A2] | 1.89 | EDO:1,2-ETHANEDIOL GOL:GLYCEROL IMD:IMIDAZOLE PO4:PHOSPHATE ION | |||
5zbk | [A2] | [A2] | [A2] | 2.3 | AMP:ADENOSINE MONOPHOSPHATE EDO:1,2-ETHANEDIOL GOL:GLYCEROL | |||
5zbl | [A2] | [A2] | [A2] | 2.3 | AMP:ADENOSINE MONOPHOSPHATE EDO:1,2-ETHANEDIOL GOL:GLYCEROL PO4:PHOSPHATE ION SO4:SULFATE ION | |||
6gfl | [A2] | [A2] | [A2] | 2.48 | ||||
6gfm | [A] | [A] | [A] | 2.77 | 0O2:GUANOSINE 5___sq___-(TETRAHYDROGEN TRIPHOSPHATE) 3___sq___-(TRIHYDROGEN DIPHOSPHATE) | |||
6pfk | [A4] | [A4] | [A4] | 2.6 | PGA:2-PHOSPHOGLYCOLIC ACID | |||
6qai | [A2] | [A2] | [A2] | 1.66 | TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA